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Transcriptome landscape of the early Brassica napus seed
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  • 英文篇名:Transcriptome landscape of the early Brassica napus seed
  • 作者:Dylan ; J.Ziegler ; Deirdre ; Khan ; Jenna ; L.Kalichuk ; Michael ; G.Becker ; Mark ; F.Belmonte
  • 英文作者:Dylan J.Ziegler;Deirdre Khan;Jenna L.Kalichuk;Michael G.Becker;Mark F.Belmonte;University of Manitoba;
  • 中文刊名:ZWXB
  • 英文刊名:植物学报(英文版)
  • 机构:University of Manitoba;
  • 出版日期:2019-05-15
  • 出版单位:Journal of Integrative Plant Biology
  • 年:2019
  • 期:v.61
  • 基金:supported by a National Science and Engineering Research Council (NSERC) Discovery and Accelerator Grant to MFB;; NSERC CGS-M to DJZ;; JLK and NSERC Vanier Scholarship to DK and MGB
  • 语种:英文;
  • 页:ZWXB201905009
  • 页数:12
  • CN:05
  • ISSN:11-5067/Q
  • 分类号:113-124
摘要
Brassica napus L.(canola) is one of the world's most economically important oilseeds. Despite our growing knowledge of Brassica genetics, we still know little about the genes and gene regulatory networks underlying early seed development. In this work, we use laser microdissection coupled with RNA sequencing to profile gene activity of both the maternal and filial subregions of the globular seed. We find subregions of the chalazal end including the chalazal endosperm, chalazal proliferating tissue, and chalazal seed coat, have unique transcriptome profiles associated with hormone biosynthesis and polysaccharide metabolism. We confirm that the chalazal seed coat is uniquely enriched for sucrose biosynthesis and transport, and that the chalazal endosperm may function as an important regulator of the maternal region through brassinosteroid synthesis. The chalazal proliferating tissue,a poorly understood subregion, was specifically enriched in transcripts associated with megasporogenesis and trehalose biosynthesis, suggesting this ephemeral structure plays an important role in both sporophytic development and carbon nutrient balance, respectively. Finally, compartmentalization of transcription factors and their regulatory circuits has uncovered previously unknown roles for the chalazal pole in early seed development.
        Brassica napus L.(canola) is one of the world's most economically important oilseeds. Despite our growing knowledge of Brassica genetics, we still know little about the genes and gene regulatory networks underlying early seed development. In this work, we use laser microdissection coupled with RNA sequencing to profile gene activity of both the maternal and filial subregions of the globular seed. We find subregions of the chalazal end including the chalazal endosperm, chalazal proliferating tissue, and chalazal seed coat, have unique transcriptome profiles associated with hormone biosynthesis and polysaccharide metabolism. We confirm that the chalazal seed coat is uniquely enriched for sucrose biosynthesis and transport, and that the chalazal endosperm may function as an important regulator of the maternal region through brassinosteroid synthesis. The chalazal proliferating tissue,a poorly understood subregion, was specifically enriched in transcripts associated with megasporogenesis and trehalose biosynthesis, suggesting this ephemeral structure plays an important role in both sporophytic development and carbon nutrient balance, respectively. Finally, compartmentalization of transcription factors and their regulatory circuits has uncovered previously unknown roles for the chalazal pole in early seed development.
引文
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