水稻白叶枯病抗性基因物理图谱定位与功能标记
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摘要
分子标记辅助选择育种已成为水稻分子育种的主要策略。明确目标基因在染色体上的物理图谱定位与功能标记的开发应用是开展分子标记辅助选择育种的前提条件。本研究对已报道的40个抗白叶枯病基因在染色体上的定位、分子标记详情进行了整理总结,并将31个水稻白叶枯病抗病基因在水稻基因组物理图谱上进行定位标注;此外,本研究还归纳xa5、xa13、Xa21、Xa27四个抗病基因的功能标记,新开发了抗性基因Xa10、Xa23的功能标记。本研究将给育种工作者更好地利用水稻抗白叶枯病基因与鉴定抗性材料提供便利。
Molecular marker-assist ed selection breeding is the key strategy of rice molecular breeding. The definition of physical mapping and development of functional molecular markers on chromosomes is the precondition of molecular marker-assisted selection breeding. In this study, we summarized the progress of reported40 resistant bacterial blight genes on location and molecular marker on chromosomes, and mapped these 31 resistance genes onto the physical map of rice genome. Furthermore, we collected functional markers of four resistance genes, including xa5, xa13, Xa21, and Xa27, and then developed functional markers of resistance genes Xa10 and Xa23. This study would facilitate breeders to make better use of rice resistance genes and identify resistance materials.
Molecular marker-assist ed selection breeding is the key strategy of rice molecular breeding. The definition of physical mapping and development of functional molecular markers on chromosomes is the precondition of molecular marker-assisted selection breeding. In this study, we summarized the progress of reported40 resistant bacterial blight genes on location and molecular marker on chromosomes, and mapped these 31 resistance genes onto the physical map of rice genome. Furthermore, we collected functional markers of four resistance genes, including xa5, xa13, Xa21, and Xa27, and then developed functional markers of resistance genes Xa10 and Xa23. This study would facilitate breeders to make better use of rice resistance genes and identify resistance materials.
引文
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Chu Z.H.,Yuan M.,Yao J.L.,Ge X.J.,Yuan B.,Xu C.G.,Li X.H.,Fu B.Y.,Li Z.K.,Bennetzen J.L.,Zhang Q.F.,and Wang S.P.,2006b,Promoter mutations of an essential gene for pollen development result in disease resistance in rice,Genes Dev.,20(10):1250-1255
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Li D.Q.,Chen L.,Li W.J.,Ke X.,Yu T.Q.,Li E.X.,Huang X.Q.,and Cheng Z.Q.,2015,Identification of bacterial blight resistance gene in Yunnan wild rice,Zuowu Xuebao(Acta A-gronomica Sinica),41(3):386-393(李定琴,陈玲,李维蛟,柯学,余腾琼,李娥贤,黄兴奇,程在全,2015,云南3种野生稻中抗白叶枯病基因的鉴定,作物学报,41(3):386-393)
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Chu Z.H.,Yuan M.,Yao J.L.,Ge X.J.,Yuan B.,Xu C.G.,Li X.H.,Fu B.Y.,Li Z.K.,Bennetzen J.L.,Zhang Q.F.,and Wang S.P.,2006b,Promoter mutations of an essential gene for pollen development result in disease resistance in rice,Genes Dev.,20(10):1250-1255
Constantine B.,Satoru T.,Jun-Ichi S.,and Katsuyuki I.,2016,Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14,a mutant line from IR24,Breed.Sci.,66(4):636-645
Ellur R.K.,Khanna A.,Gopala K.S.,Bhowmick P.K.,Vinod K.K.,Nagarajan M.,Mondal K.K.,Singh N.K.,Singh K.,Prabhu K.V.,and Singh A.K.,2016,Marker-aided incorporation of Xa38,a novel bacterial blight resistance gene,in PB1121 and comparison of its resistance spectrum with xa13+Xa21,Sci.Rep.,6:29188
Goto T.,Matsumoto T.,Furuya N.,Tsuchiya K.,and Yoshimura A.,2009,Mapping of bacterial blight resistance gene Xa11on rice chromosome 3,Japan Agricultural Research Quarterly,43(3):221-225
Gu K.Y.,Tian D.S.,Yang F.,Wu L.,Sreekala C.,Wang D.,Wang G.L.,and Yin Z.,2004,High-resolution genetic mapping of Xa27(t),a new bacterial blight resistance gene in rice,Oryza sativa L.,Theor.Appl.Genet.,108(5):800-807
Gu K.Y.,Sangha J.S.,Li Y.,and Yin Z.C.,2008,High-resolution genetic mapping of bacterial blight resistance gene Xa10,Theor.Appl.Genet.,116(2):155-163
Gu K.Y.,Yang B.,Tian D.S.,Wu L.F.,Wang D.J.,Sreekala C.,Yang F.,Chu Z.Q.,Wang G.L.,White F.F.,and Yin Z.C.,2005,R gene expression induced by a type-Ⅲeffector triggers disease resistance in rice,Nature,435(7045):1122-1125
Guo S.B.,Zhang R.P.,and Lin X.H.,2010,Identification and mapping of a novel bacterial blight resistance gene Xa35(t)originatd from Oryza minuta,Zhongguo Nongye Kexue(Scientia Agricultura Sinica),43(13):2611-2618(郭嗣斌,张端品,林兴华,2010,小粒野生稻抗白叶枯病新基因的鉴定与初步定位,中国农业科学,43(13):2611-2618)
He Q.,Li D.B.,Zhu Y.S.,Tan M.P.,Zhang D.P.,and Lin X.H.,2006,Fine mapping of Xa2,a bacterial blight resistance gene in rice,Mol.Breed.,17(1):1-6
Hur Y.J.,Cho J.H.,Park H.S.,Noh T.H.,Park D.S.,Lee J.Y.,Sohn Y.B.,Shin D.J.,Song Y.C.,Kwon Y.U.,and Lee J.H.,2016,Pyramiding of two rice bacterial blight resistance genes,Xa3 and Xa4,and a closely linked cold-tolerance QTL on chromosome 11,Theor.Appl.Genet.,129(10):1-11
Hutin M.,Sabot F.,Ghesquière A.,Koebnik R.,and Szurek B.,2015,A knowledge based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice,Plant J.,84(4):694-703
Iyer A.S.,and Mccouch S.R.,2004,The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance,Mol.Plant Microbe Interact.,17(12):1348-1354
Iyerpascuzzi A.S.,Jiang H.,Huang L.,and Mccouch S.R.,2008,Genetic and functional characterization of the rice bacterial blight disease resistance gene xa5,Phytopathology,98(3):289-295
Jin X.W.,Wang C.L.,Yang Q.,Jiang Q.X.,Fan Y.L.,Liu G.C.,and Zhao K.J.,2007,Breeding of near-isogenic line CBB30and molecular mapping of Xa30(t),a new resistance gene to bacterial blight in rice,Zhongguo Nongye Kexue(Scientia Agricultura Sinica),40(6):1094-1100(金旭炜,王春连,杨清,江祺祥,樊颖伦,刘古春,赵开军,2007,水稻抗白叶枯病近等基因系CBB30的培育及Xa30(t)的初步定位,中国农业科学,40(6):1094-1100)
Kim S.M.,Suh J.P.,Qin Y.,Noh T.H.,Reinke R.F.,and Jena K.K.,2015,Identification and fine-mapping of a new resistance gene,Xa40,conferring resistance to bacterial blight races in rice(Oryza sativa L.),Theor.Appl.Genet.,128(10):1933-1943
Korinsak S.,Sriprakhon S.,Sirithanya P.,Jairin J.,Korinsak S.,Vanavichit A.,and Toojinda T.,2009,Identification of microsatellite markers(SSR)linked to a new bacterial blight resistance gene xa33(t)in rice cultivar'Ba7',Maejo Int.J.Sci.Technol.,3(2):235-247
Kumar P.N.,Sujatha K.,Laha G.S.,Rao K.S.,Mishra B.,Viraktamath B.C.,Hari Y.,Reddy C.S.,Balachandran S.M.,Ram T.,Madhav M.S.,Rani S.N.,Neeraja C.N.,Reddy G.A.,Shaik H.,and Sundaram R.M.,2012,Identification and fine-mapping of Xa33,a novel gene for resistance to Xanthomonas oryzae pv.oryzae,Phytopathology,102(2):222-228
Li D.,He M.D.,Wu D.,Zhao J.F.,He G.L.,Xia Z.H.,and Yuan Q.H.,2018,Identification of resistance of wild rice in Hainan to bacterial blight of rice,Fenzi Zhiwu Yuzhong(Molecular Plant Breeding),16(3):832-839(李栋,何美丹,吴丹,赵建发,何光亮,夏志辉,袁潜华,2018,海南普通野生稻对水稻白叶枯病的抗性鉴定,分子植物育种,16(3):832-839)
Li D.Q.,Chen L.,Li W.J.,Ke X.,Yu T.Q.,Li E.X.,Huang X.Q.,and Cheng Z.Q.,2015,Identification of bacterial blight resistance gene in Yunnan wild rice,Zuowu Xuebao(Acta A-gronomica Sinica),41(3):386-393(李定琴,陈玲,李维蛟,柯学,余腾琼,李娥贤,黄兴奇,程在全,2015,云南3种野生稻中抗白叶枯病基因的鉴定,作物学报,41(3):386-393)
Miao L.L.,Wang C.L.,Zheng C.K.,Che J.Y.,Gao Y.,Wen C.Y.,Li G.Q.,and Zhao K.J.,2010,Molecular mapping of a new gene for resistance to rice bacterial blight,Zhongguo Nongye Kexue(Scientia Agricultura Sinica),43(15):3051-3058(苗丽丽,王春连,郑崇珂,车晋英,高英,温义昌,李贵全,赵开军,2010,水稻抗白叶枯病新基因的初步定位,中国农业科学,43(15):3051-3058)
Nelson R.J.,Baraoidan M.R.,Cruz C.M.V.,Yap I.V.,Leach J.E.,Mew T.W.,and Leung H.,1994,Relationship between phylogeny and pathotype for the bacterial blight pathogen of rice,Appl.Environ.Microbiol.,60(9):3275-3283
Park E.J.,Grabińska K.A.,Guan Z.,Stránecky V.,HartmannováH.,HodaňováK.,Bare觢ováV.,SovováJ.,Jozsef L.,Ondru觢kováN.,HansíkováH.,Honzík T.,Zeman J.,HulkováH.,Wen R.,Kmoch S.,and Sessa W.C.,2014,Mutation of Nogo-B receptor,a subunit of cis-prenyltransferase,causes a congenital disorder of glycosylation,Cell Metab.,20(3):448-457
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