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利用JP探针(Junction Probe)技术快速检测金黄色葡萄球菌
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摘要
目的:1.通过对基于限制性内切酶核酸等温检测技术的认识和研究,旨在建立一种适合实验室的,并可以广泛推广到基层实验医学实验室的JP(Junction Probe)探针技术。
     2.应用JP探针技术实现金黄色葡萄球菌(Staphyloccocus aureus)的快速检测
     方法:1、设计三套JP探针体系,通过对合成的金黄色葡萄球菌特异性单链的荧光检测来筛选出酶切效率最高,反应稳定性最好的探针体系,同时优化模板探针反应比、探究探针检测特异性以及检测双链的特性。
     2、在深入了解金黄色葡萄球菌生物学特性的基础上,对从医院获得的菌株,进行扩大培养并通过平板培养获得单克隆,作为后续的实验材料。
     3、针对步骤1、2,结合PCR扩增技术以及磁珠提取单链技术在获得大量目标单链的基础上,实现JP探针对金黄色葡萄球菌的快速检测
     结果:1、应用JP探针检测金黄色葡萄球菌合成单链的结果表明,该方法检测金黄色葡萄球菌的可行性,建立了一种新的快速核酸检测方法。本实验通过设计三套不同的探针体系筛选出了PA1-PB1探针系统,其反应速率快,反应稳定性好,适合进行后续菌的检测;PA1-PB1探针体系优化的实验结果表明,该探针体系可以达到的检测下限是4nM,另外该探针体系可以很好的鉴别金黄色葡萄球菌以及与目标菌基因序列最相近的表皮葡萄球菌。同时合成目标单链与互补单链形成的双链探针反应,表明目前的探针体系还不能很好的检测双链,这就要求在检测临床菌时,必须制备出一定长度的单链才能有效进行。
     2、通过对金黄色葡萄球菌的培养结果表明,本实验的研究菌对生长条件要求不高,在LB培养基上就可以生长良好,为后续的实验提供了大量稳定的实验材料。
     3、应用JP探针检测金黄色葡萄球菌的实验表明,该方法能够快速而有效的鉴定金黄色葡萄,较传统的生化鉴定方法具有很大的优势。应用PCR扩增金黄色葡萄球菌,得到了大量的检测片段,达到第一级的放大;由于JP探针检测的目标片段是单链,为此本实验结合磁珠技术快速的提取得到了大量高纯度的单链。应用PA1-PB1探针体系检测磁珠提取单链,实现荧光信号的二级放大,从而达到仪器可检测的范围。通过以上两级放大本实验的阳性检出率达到97.25%,较单纯使用PCR技术更准确。
Purpose:1. To establish an isothermal nucleic acid detection method, Junction Probe (JP), based on restriction endonuclease, suitable for both research and clinic laboratory.
     2. To develop a rapid method to detect Staphyloccocus aureus using JP technology.
     Method:1. Three pairs of probes were designed and tested. By using the probes with highest reactivity and reaction reproducibility, the molar ratio of the probes was optimized, the detection specificity was investigated and the double-stranded targets were tested.
     2. Based on the biological nature of Staphyloccocus aureus, the bacterial strains from hospitals were grown on LB agar and the genomic DNA were obtained by the purification of alkali treatment method.
     3. Single strand DNA were obtained by combining PCR amplification and magnetic beads extraction, and Staphyloccocus aureus was detected using JP technology.
     Discussion:1.The feasibility of the method to detect Staphyloccocus aureus was realized by detecting the artificial single-strand DNA target. The PA1-PB1probe pair was screened to give the fastest reaction rate and best reproducibility. The experiments showed that the detection limit of this system is4nM of temple DNA, and it can distinguish Staphylococcus aureus from Staphylococcus epidermidis, which contains SNP in the target sequence. The experiments also showed that the systems can not detect double stranded DNA, so single stranded target must be prepared while detecting clinical samples.
     2.The cultivation results of Staphylococcus aureus showed that the bacteria does not need stringent growing conditions, and LB medium is good enough, which satisfied our subsequent experimental requirement.
     3.This method can quickly and effectively detect Staphylococcus aureus, and has great advantages over traditional biochemical identification methods. The system has a great S/N ratio, resulting from both of the PCR and JP signal amplification in the detection of single-strand DNA samples. With the two-stage examination, the positive ratio is up to97.25%by our PCR-JP method, which is more specific than PCR technology alone.
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