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一株苝醌类光敏剂产生菌AL18的cDNA文库的构建
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摘要
本研究以一株采自云南西部山区,次生代谢产物为苝醌类衍生物光敏剂的丝状真菌AL18为实验材料,在确立了其总RNA提取方法的基础上,构建了cDNA文库,主要结果如下:
     1.为克服RNA易降解,丝状真菌富含RNase(RNA酶)和多糖的困难,在参考不同实验材料的总RNA提取方法的基础上,通过实验确立了采用异硫氰酸胍和β-巯基乙醇联合变性,酚、氯仿、异戊醇多次抽提,使RNA留在水相而DNA和蛋白质进入有机相,然后用异丙醇沉淀RNA的方法,得到了完整、均一的总RNA,质量能够满足构建cDNA文库的要求。
     2.利用MMLV反转录酶把总RNA中的mRNA反转录成cDNA,用特异引物进行LD-PCR扩增合成双链cDNA;用CHROMA SPIN-400Column对cDNA进行分级分离,去除小于500bp的cDNA片段;用带有粘性末端的双链cDNA与λTriplEx2载体连接,利用λ噬菌体包装蛋白对合成的双链cDNA进行体外包装,包装产物侵染E.coli XL-Blue获得cDNA文库。该cDNA文库的滴度为1.04×10~6pfu/ml,扩增后文库的滴度为1.32×10~(10)pfu/ml,蓝白斑筛选证实其重组率为82%。同时,由于反转录过程中采用附加序列的方法使全长mRNA得到反转录,所以得到的cDNA是完整的,有利于各种基因的全长cDNA的获得。为筛选文库克隆苝醌类光敏剂生物合成中的聚酮合成酶基因以及在后续工作中克隆聚酮合成酶的全基因簇打下坚实的基础。
This work uses a fungus AL18 producing Perylenequinonoid derivatives photosensitizer which was picked from the mountainous area at the western part of Yunnan.On the basis of establishing the method of total RNA extraction, the cDNA library is constructed.The main results are as follows:
    1. In order to get over the problem that RNA is easy to degrade and there are a lot of RNase and glucide in this fungus. On the basis of consulting many methods of total RNA extraction, the method is established by experiment for total RNA extraction using guanidinium isothiocyante and β-mercaptoethanol for denaturation, then using water-satured phenol ,chloroform and isoamylalcohole for extraction, RNA stay in water ,while DNA and protein stay in another medium. Finally, RNA is deposited by isopropylalcohol .The integrity and purification of the total RNA isolated are eligible and meet the requirement to construct cDNA library.
    2. The cDNA is synthesized from the total RNA with the one point mutant of Moloney murine leukemia virus(MMLV) reverse transcriptase,and the cDNA is further size-fractioned by CHROMA SPIN-400 Column to remove the fraction shorter than 500bp. The dscDNA is cloned into the λTriplEx2 vector and the resulting ligating matarial is λ-phage packaged. The unamplifed cDNA library is titered using E.coli XL-Blue, and it turns out that the titer of the cDNA library is 1.04 ×10~6 pfu/ml,the titer of the amplified cDNA library isl.32×10~(10)pfu/ml,and the recombinant efficiency is 82% through white/blue screening.It is available to clone the polyketide biosynthase gene for Polyketide biosynthesis.
引文
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