珊瑚白化及温度相关基因的研究进展
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摘要
近年来,由于海洋酸化、海洋污染、海洋表面温度升高以及人类活动的影响,珊瑚礁遭受到了严重的白化袭击,导致珊瑚礁处于退化状态。相关功能基因在珊瑚白化过程中可能起到增强珊瑚的抗逆性和恢复能力等作用,探讨这些基因在珊瑚白化过程中的表达变化及调控作用也已经成为了当今的研究热点,通过分析其生理调控作用,可以深入了解珊瑚白化机制与恢复机制。本综述总结了珊瑚白化与温度的关系和珊瑚温度相关基因的研究进展,并重点介绍了细胞响应机制中的细胞免疫相关基因、细胞生长调控基因、钙离子相关基因、核酸稳定与修复相关基因以及其它重要基因的研究。
In recent years, due to the ocean acidification, marine pollution, the sea surface temperature rising and the influence of human activity, coral reef subjected to severe bleaching, result in coral reefs in a degraded state.Related functional genes may make contribution to increasing the capability of resilience and recovery in the process of coral bleaching, and study these genes expression and regulation effect in the process of coral bleaching has become a research hotspot, by analysis these related genes function of physiological regulation, we can understand coral bleaching and recovery mechanism. In this paper, the research progress of the relationship between coral bleaching and temperature-related genes were reviewed, and these genes focused on cell response mechanisms researches including cellular immune-related genes, cell growth regulation-related genes,calcium-related genes, nucleic acid stabilization and repair-related genes and other important genes.
In recent years, due to the ocean acidification, marine pollution, the sea surface temperature rising and the influence of human activity, coral reef subjected to severe bleaching, result in coral reefs in a degraded state.Related functional genes may make contribution to increasing the capability of resilience and recovery in the process of coral bleaching, and study these genes expression and regulation effect in the process of coral bleaching has become a research hotspot, by analysis these related genes function of physiological regulation, we can understand coral bleaching and recovery mechanism. In this paper, the research progress of the relationship between coral bleaching and temperature-related genes were reviewed, and these genes focused on cell response mechanisms researches including cellular immune-related genes, cell growth regulation-related genes,calcium-related genes, nucleic acid stabilization and repair-related genes and other important genes.
引文
Carpenter L.W.,Patterson M.R.,and Bromage E.S.,2010,Water flow influences the spatiotemporal distribution of heat shock protein 70 within colonies of the scleractinian coral Montastrea annularis(Ellis and Solander,1786)following heat stress:implications for coral bleaching,Journal of Experimental Marine Biology and Ecology,347(1):52-59
Capozzi F.,Casadei F.,and Luchinat C.,2006,EF-hand protein dy namics and evolution of calcium signal transduction:an NMR view,J.Biol.Inorg.Chem.,11:949-962
De Salvo M.K.,Voolstra C.R.,Sunagawa S.,Schwarz J.A.,Stillman J.H.,Coffroth M.A.,Szmant A.M.,and Medina M.,2008,Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata,Molecular Ecology,17(17):3952-3971
De Salvo M.K.,Sunagawa S.,Voolstra C.R.,and Medina M.,2010,Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata,Mar.Ecol.Prog.Ser.,402:97-113
Dove S.,Ortiz J.C.,Enriquez S.,Fine M.,Fisher P.,Iglesias P.R.,Thornhill D.,and Hoegh G.O.,2006,Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress,Limnol Oceanogr,51:1149-1158
Dove S.,2004,Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching,Marine Ecology Progress Series,272:99-116
Dixon G.B.,Davies S.W.,Aglyamova G.A.,Meyer E.,Bay L.K.,and Matz M.V.,2015,Genomic determinants of coral heat tolerance across latitudes,Science,348(6242):1460-1462
Gates R.D.,Baghdasarian G.,and Muscatine L.,1992,Temperature stress causes host cell detachment in symbiotic cnidarians:implications for coral bleaching,Biol.Bull.,182:324-332
Gracey A.Y.,Troll J.V.,and Somero G.N.,2001,Hypoxia-induced gene expression profiling in the euryoxic fish,Gillichthys mirabilis,Proc.Natl.Acad.Sci.USA,98(4):1993-1998
Hoegh G.O.,1999,Climate change,coral bleaching and the future of the world's coral reefs,Marine and Freshwater,50(8):839-866
Herruer M.H.,Mager W.H.,Raue H.A.,Vreken P.,Wilms E.,and Planta R.J.,1988,Mild temperature shock affects transcription of yeast ribosomal protein genes as well as the stability of their m RNAs,Nucleic Acids Res.,16:7925-7929
Harding H.P,Zhang Y.,Zeng H.,Novoa I.,Lu P.D.,Calfon M.,Sadri N.,Yun C.,Popko B.,Paules R.,Stojdl D.F.,Bell J.C.,Hettmann T.,Leiden J.M.,and Ron D.,2003,An integrated stress response regulates amino acid metabolism and resistance to oxidative stress,Mol.Cell,11:619-633
Jeremie V.D.,Mehdi A.,Emmanuel R.,Laurent F.,David D.,Yves M.,Christine F.,Eric T.,Sylvie T.,Didier Z.,Denis A.,and Guillaume M.,2009,Coral bleaching under thermal stress:putative involvement of host/symbiont recognition mechanisms,BMC Physiology,Bio.Med.Central,9(1):14-16
Jokiel P.L.,2011,The reef coral two compartment proton fluxmodel:a new approach relating tissue-level physiologicalprocesses to gross corallum morphology,Journal of Experi-mental Marine Biology and Ecology,409(1/2):1-12
Lv Y.L.,Yuan J.J.,Li Q.F.,Zhang Y.Q.,Lv X.T.,and Su C.,2016,Impacts of land-based human activities on coastal and offshore marine ecosystems,Shengtai Xuebao(Acta Ecologica Sinica),36(5):1183-1191(吕永龙,苑晶晶,李奇锋,张悦清,吕笑天,苏超,2016,陆源人类活动对近海生态系统的影响,生态学报,36(5):1183-1191)
Li S.,Yu K.F.,Chen T.R.,Shi Q.,and Chen T.G.,2011,Seasonal patterns of densities of symbiotic zooxanthellae in scleractinian corals from Daya Bay,Northern South China Sea,and relation to coral bleaching,Redai Haiyang Xuebao(Journal of Tropical Oceanography),30(2):39-45(李淑,余克服,陈天然,施祺,陈特固,2011,珊瑚共生虫黄藻密度的季节变化及其与珊瑚白化的关系-以大亚湾石珊瑚为例,热带海洋学报,30(2):39-45)
Li S.,Yu K.F.,Shi Q.,Chen T.R.,and Zhao M.X.,2009,Low water temperature tolerance and responding mode of scleractinian corals in Sanya Bay,Yingyong Shengtai Xuebao(Chinese Journal of Applied Ecology),20(9):2289-2295(李淑,余克服,施祺,陈天然,赵美霞,2009,造礁石珊瑚对低温的耐受能力及响应模式,应用生态学报,20(9):2289-2295)
Lesser M.P.,1996,Elevated temperatures and ultraviolet radiation cause oxidative stress and inhibit photosynthesis in ymbiotic dinoflagellates,Limnology and Oceanography,41(2):271-283
Lesser M.P.,1997,Oxidative stress causes coral bleaching during exposure to elevated temperatures,Coral Reefs,16:187-192
Lesser M.P.,and Farrell J.H.,2004,Exposure to solar radiationincreases damage to both host tissues and algal symbionts of corals during thermal stress,Coral Reefs,23(3):367-377
Muller J.,Menzel D.,and Samaj J.,2007,Cell-type-specific disruption and recovery of the cytoskeleton in Arabidopsis thaliana epidermal root cells upon heat shock stress,Protoplasma,230(3-4):231-242
Niu Y.H.,and Dong J.,2015,Progress on tumor suppressor gene and aging,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),34(7):1549-1554(牛育鸿,董靖,2015,肿瘤抑制基因与衰老的研究进展,基因组学与应用生物学,34(7):1549-1554)
Orrenius S.,Zhivotovsky B.,and Nicotera P.,2003,Regulation of cell death:the calcium-apoptosis link,Nature Reviews Molecular Cell Biology,4(7):552-565
Perkins N.D.,2007,Integrating cell-signalling pathways withNF-kappa B and IKK function,Nat.Rev.Mol.Cell.Biol.,8(1):49-62
Shi Q.,Yan H.Q.,Zhang H.L.,and Zhao M.X.,2011,Spatial variations of stony coral cover on the reef slope of Yongxing Island,Xisha Islands,Redai Haiyang Xuebao(Journal of Tropical Oceanography),30(2):10-25(施祺,严宏强,张会领,赵美霞,2011,西沙群岛永兴岛礁坡石珊瑚覆盖率的空间变化,热带海洋学报,30(2):10-25)
Shu Q.,Chen M.H.,Wang H.H.,Ruan S.F.Y.,Xie L.,2016,Effects of P38 signal pathways a ctivate on the expression of antioxidant enzymes and the apoptosis of brain tissue in rats,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),35(8):1871-1876(舒泉,陈蒙华,王慧慧,阮氏芳英,谢露,2016,P38通路激活对大鼠脑组织抗氧化酶的表达和凋亡的影响,基因组学与应用生物学,35(8):1871-1876)
Souter P.,Bay L.K.,Andreakis N.,Csaszar N.,Seneca F.O.,Seneca M.J.H.,and Van O.,2011,A multilocus,temperature stress-related gene expression profile assay in Acropora millepora,a dominant reef-building coral,Molecular Ecology Resources,11:328-334
Schwarz J.A.,Brokstein P.B.,Voolstra C.,Terry A.Y.,Miller D.J.,Szmant A.M.,Coffroth M.A.,and Medina M.,2008,Coral life history and symbiosis:functional genomic resources for two reef building Caribbean corals,Acropora palmata and Montastraea faveolata,BMC Genomics,9(1):97
Shapiro S.D.,1998,Matrix metalloproteinase degradation of extracellular matrix:biological consequences,Current Opinion in Cell Biology,10:602-608
Sharp V.A.,Brown B.E.,and Miller D.,1997,Heat shock protein(hsp70)expression in the tropical reef coral Goniopora djiboutiensis,Journal of Thermal Biology,22(1):11-19
Shen C.,Liu C.W.,and Liu L.,2016,Heat-induced stress genes Hsp70,Hsp90 and chloroplast psa A and psb A gene expressions of Galaxea astreata endosymbiotic zooxanthella revealing the ability of tolerance and recovery,Redaihaiyang Xuebao(Journal of Tropical Oceanography),35(3):72-78(沈城,刘楚吾,刘丽,2016,温度胁迫及恢复初期稀杯盔形珊瑚共生虫黄藻Hsp70、Hsp90、psa A、psb A基因表达分析,热带海洋学报,35(3):72-78)
Salih A.,Larkum A.,Cox G.,Kuhl M.,and Hoegh G.O.,2000,Fluorescent pigments in corals are photoprotective,Nature,408:850-853
Salih A.,Cox G.,Szymczak R.,Coles S.L.,Baird A.H.,Dunstan A.,Cocco G.,Mills J.,and Larkum A.,2006,The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals,Japanese Coral Reef Society,1:1-14
Smith K.C.,and Dove S.,2008,Gene expression of a green fluorescent protein homolog as a host-specific biomarker of heat stress within a reef-building coral,Marine Biotechnology,10:166-180
Wang W.H.,Yu K.F.,and Wang Y.H.,2016,A review on the research of coral reefs in the Weizhou Island,Beibu Gulf,Redai Dili(Tropical Geography),36(1):72-79(王文欢,余克服,王英辉,2016,北部湾涠洲岛珊瑚礁的研究历史、现状与特色,热带地理,36(1):72-79)
Zhao M.X.,Yu K.F.,and Zhang Q.M.,2006,Review on coral reefs biodiversity and ecological function,Shengtai Xuebao(Acta Ecologica Sinica),26(1):186-194(赵美霞,余克服,张乔民,2006,珊瑚礁区的生物多样性及其生态功能,生态学报,26(1):186-194)
Zhao H.T.,Wang L.R.,and Yuan J.Y.,2016,Sustainable development of the coral reefs in the South China Sea Islands,Redai Dili(Tropical Geography),36(1):55-65(赵焕庭,王丽荣,袁家义,2016,南海诸岛珊瑚礁可持续发展,热带地理,236(1):55-65)
Wang M.Q.,and Zhang D.Y.,2015,Research advance of heat shock protein 70 gene family and its biological functions in plant,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),34(2):421-428(王明强,张道远,2015,植物热激蛋白70基因家族及其生物学功能研究进展,基因组学与应用生物学,34(2):421-428)
Capozzi F.,Casadei F.,and Luchinat C.,2006,EF-hand protein dy namics and evolution of calcium signal transduction:an NMR view,J.Biol.Inorg.Chem.,11:949-962
De Salvo M.K.,Voolstra C.R.,Sunagawa S.,Schwarz J.A.,Stillman J.H.,Coffroth M.A.,Szmant A.M.,and Medina M.,2008,Differential gene expression during thermal stress and bleaching in the Caribbean coral Montastraea faveolata,Molecular Ecology,17(17):3952-3971
De Salvo M.K.,Sunagawa S.,Voolstra C.R.,and Medina M.,2010,Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata,Mar.Ecol.Prog.Ser.,402:97-113
Dove S.,Ortiz J.C.,Enriquez S.,Fine M.,Fisher P.,Iglesias P.R.,Thornhill D.,and Hoegh G.O.,2006,Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress,Limnol Oceanogr,51:1149-1158
Dove S.,2004,Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching,Marine Ecology Progress Series,272:99-116
Dixon G.B.,Davies S.W.,Aglyamova G.A.,Meyer E.,Bay L.K.,and Matz M.V.,2015,Genomic determinants of coral heat tolerance across latitudes,Science,348(6242):1460-1462
Gates R.D.,Baghdasarian G.,and Muscatine L.,1992,Temperature stress causes host cell detachment in symbiotic cnidarians:implications for coral bleaching,Biol.Bull.,182:324-332
Gracey A.Y.,Troll J.V.,and Somero G.N.,2001,Hypoxia-induced gene expression profiling in the euryoxic fish,Gillichthys mirabilis,Proc.Natl.Acad.Sci.USA,98(4):1993-1998
Hoegh G.O.,1999,Climate change,coral bleaching and the future of the world's coral reefs,Marine and Freshwater,50(8):839-866
Herruer M.H.,Mager W.H.,Raue H.A.,Vreken P.,Wilms E.,and Planta R.J.,1988,Mild temperature shock affects transcription of yeast ribosomal protein genes as well as the stability of their m RNAs,Nucleic Acids Res.,16:7925-7929
Harding H.P,Zhang Y.,Zeng H.,Novoa I.,Lu P.D.,Calfon M.,Sadri N.,Yun C.,Popko B.,Paules R.,Stojdl D.F.,Bell J.C.,Hettmann T.,Leiden J.M.,and Ron D.,2003,An integrated stress response regulates amino acid metabolism and resistance to oxidative stress,Mol.Cell,11:619-633
Jeremie V.D.,Mehdi A.,Emmanuel R.,Laurent F.,David D.,Yves M.,Christine F.,Eric T.,Sylvie T.,Didier Z.,Denis A.,and Guillaume M.,2009,Coral bleaching under thermal stress:putative involvement of host/symbiont recognition mechanisms,BMC Physiology,Bio.Med.Central,9(1):14-16
Jokiel P.L.,2011,The reef coral two compartment proton fluxmodel:a new approach relating tissue-level physiologicalprocesses to gross corallum morphology,Journal of Experi-mental Marine Biology and Ecology,409(1/2):1-12
Lv Y.L.,Yuan J.J.,Li Q.F.,Zhang Y.Q.,Lv X.T.,and Su C.,2016,Impacts of land-based human activities on coastal and offshore marine ecosystems,Shengtai Xuebao(Acta Ecologica Sinica),36(5):1183-1191(吕永龙,苑晶晶,李奇锋,张悦清,吕笑天,苏超,2016,陆源人类活动对近海生态系统的影响,生态学报,36(5):1183-1191)
Li S.,Yu K.F.,Chen T.R.,Shi Q.,and Chen T.G.,2011,Seasonal patterns of densities of symbiotic zooxanthellae in scleractinian corals from Daya Bay,Northern South China Sea,and relation to coral bleaching,Redai Haiyang Xuebao(Journal of Tropical Oceanography),30(2):39-45(李淑,余克服,陈天然,施祺,陈特固,2011,珊瑚共生虫黄藻密度的季节变化及其与珊瑚白化的关系-以大亚湾石珊瑚为例,热带海洋学报,30(2):39-45)
Li S.,Yu K.F.,Shi Q.,Chen T.R.,and Zhao M.X.,2009,Low water temperature tolerance and responding mode of scleractinian corals in Sanya Bay,Yingyong Shengtai Xuebao(Chinese Journal of Applied Ecology),20(9):2289-2295(李淑,余克服,施祺,陈天然,赵美霞,2009,造礁石珊瑚对低温的耐受能力及响应模式,应用生态学报,20(9):2289-2295)
Lesser M.P.,1996,Elevated temperatures and ultraviolet radiation cause oxidative stress and inhibit photosynthesis in ymbiotic dinoflagellates,Limnology and Oceanography,41(2):271-283
Lesser M.P.,1997,Oxidative stress causes coral bleaching during exposure to elevated temperatures,Coral Reefs,16:187-192
Lesser M.P.,and Farrell J.H.,2004,Exposure to solar radiationincreases damage to both host tissues and algal symbionts of corals during thermal stress,Coral Reefs,23(3):367-377
Muller J.,Menzel D.,and Samaj J.,2007,Cell-type-specific disruption and recovery of the cytoskeleton in Arabidopsis thaliana epidermal root cells upon heat shock stress,Protoplasma,230(3-4):231-242
Niu Y.H.,and Dong J.,2015,Progress on tumor suppressor gene and aging,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),34(7):1549-1554(牛育鸿,董靖,2015,肿瘤抑制基因与衰老的研究进展,基因组学与应用生物学,34(7):1549-1554)
Orrenius S.,Zhivotovsky B.,and Nicotera P.,2003,Regulation of cell death:the calcium-apoptosis link,Nature Reviews Molecular Cell Biology,4(7):552-565
Perkins N.D.,2007,Integrating cell-signalling pathways withNF-kappa B and IKK function,Nat.Rev.Mol.Cell.Biol.,8(1):49-62
Shi Q.,Yan H.Q.,Zhang H.L.,and Zhao M.X.,2011,Spatial variations of stony coral cover on the reef slope of Yongxing Island,Xisha Islands,Redai Haiyang Xuebao(Journal of Tropical Oceanography),30(2):10-25(施祺,严宏强,张会领,赵美霞,2011,西沙群岛永兴岛礁坡石珊瑚覆盖率的空间变化,热带海洋学报,30(2):10-25)
Shu Q.,Chen M.H.,Wang H.H.,Ruan S.F.Y.,Xie L.,2016,Effects of P38 signal pathways a ctivate on the expression of antioxidant enzymes and the apoptosis of brain tissue in rats,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),35(8):1871-1876(舒泉,陈蒙华,王慧慧,阮氏芳英,谢露,2016,P38通路激活对大鼠脑组织抗氧化酶的表达和凋亡的影响,基因组学与应用生物学,35(8):1871-1876)
Souter P.,Bay L.K.,Andreakis N.,Csaszar N.,Seneca F.O.,Seneca M.J.H.,and Van O.,2011,A multilocus,temperature stress-related gene expression profile assay in Acropora millepora,a dominant reef-building coral,Molecular Ecology Resources,11:328-334
Schwarz J.A.,Brokstein P.B.,Voolstra C.,Terry A.Y.,Miller D.J.,Szmant A.M.,Coffroth M.A.,and Medina M.,2008,Coral life history and symbiosis:functional genomic resources for two reef building Caribbean corals,Acropora palmata and Montastraea faveolata,BMC Genomics,9(1):97
Shapiro S.D.,1998,Matrix metalloproteinase degradation of extracellular matrix:biological consequences,Current Opinion in Cell Biology,10:602-608
Sharp V.A.,Brown B.E.,and Miller D.,1997,Heat shock protein(hsp70)expression in the tropical reef coral Goniopora djiboutiensis,Journal of Thermal Biology,22(1):11-19
Shen C.,Liu C.W.,and Liu L.,2016,Heat-induced stress genes Hsp70,Hsp90 and chloroplast psa A and psb A gene expressions of Galaxea astreata endosymbiotic zooxanthella revealing the ability of tolerance and recovery,Redaihaiyang Xuebao(Journal of Tropical Oceanography),35(3):72-78(沈城,刘楚吾,刘丽,2016,温度胁迫及恢复初期稀杯盔形珊瑚共生虫黄藻Hsp70、Hsp90、psa A、psb A基因表达分析,热带海洋学报,35(3):72-78)
Salih A.,Larkum A.,Cox G.,Kuhl M.,and Hoegh G.O.,2000,Fluorescent pigments in corals are photoprotective,Nature,408:850-853
Salih A.,Cox G.,Szymczak R.,Coles S.L.,Baird A.H.,Dunstan A.,Cocco G.,Mills J.,and Larkum A.,2006,The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals,Japanese Coral Reef Society,1:1-14
Smith K.C.,and Dove S.,2008,Gene expression of a green fluorescent protein homolog as a host-specific biomarker of heat stress within a reef-building coral,Marine Biotechnology,10:166-180
Wang W.H.,Yu K.F.,and Wang Y.H.,2016,A review on the research of coral reefs in the Weizhou Island,Beibu Gulf,Redai Dili(Tropical Geography),36(1):72-79(王文欢,余克服,王英辉,2016,北部湾涠洲岛珊瑚礁的研究历史、现状与特色,热带地理,36(1):72-79)
Zhao M.X.,Yu K.F.,and Zhang Q.M.,2006,Review on coral reefs biodiversity and ecological function,Shengtai Xuebao(Acta Ecologica Sinica),26(1):186-194(赵美霞,余克服,张乔民,2006,珊瑚礁区的生物多样性及其生态功能,生态学报,26(1):186-194)
Zhao H.T.,Wang L.R.,and Yuan J.Y.,2016,Sustainable development of the coral reefs in the South China Sea Islands,Redai Dili(Tropical Geography),36(1):55-65(赵焕庭,王丽荣,袁家义,2016,南海诸岛珊瑚礁可持续发展,热带地理,236(1):55-65)
Wang M.Q.,and Zhang D.Y.,2015,Research advance of heat shock protein 70 gene family and its biological functions in plant,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),34(2):421-428(王明强,张道远,2015,植物热激蛋白70基因家族及其生物学功能研究进展,基因组学与应用生物学,34(2):421-428)