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Simulation-guided design of serological surveys of the cumulative incidence of influenza infection
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  • 作者:Kendra M Wu (5)
    Steven Riley (6)

    5. School of Public Health
    ; LKS Faculty of Medicine ; The University of Hong Kong ; Hong Kong SAR ; China
    6. Medical Research Council Centre for Outbreak Analysis and Modelling
    ; Department of Infectious Disease Epidemiology ; School of Public Health ; Imperial College London ; London ; UK
  • 关键词:Infection attack rate ; Cumulative incidence ; Seroprevalence ; Influenza ; Serological survey ; Cross ; sectional study design ; Longitudinal study design ; Mathmatical modelling
  • 刊名:BMC Infectious Diseases
  • 出版年:2014
  • 出版时间:December 2014
  • 年:2014
  • 卷:14
  • 期:1
  • 全文大小:480 KB
  • 参考文献:1. Cowling, BJ, Chan, KH, Fang, VJ, Lau, LLH, So, HC, Fung, ROP, Ma, ESK, Kwong, ASK, Chan, C-W, Tsui, WWS, Ngai, H-Y, Chu, DWS, Lee, PWY, Chiu, M-C, Leung, GM, Peiris, JSM (2010) Comparative epidemiology of pandemic and seasonal influenza A in households. N Engl J Med 362: pp. 2175-2184 CrossRef
    2. Lipsitch, M, Riley, S, Cauchemez, S, Ghani, AC, Ferguson, NM (2009) Managing and reducing uncertainty in an emerging influenza pandemic. N Engl J Med 361: pp. 112-115 CrossRef
    3. Miller, E, Hoschler, K, Hardelid, P, Stanford, E, Andress, N, Zambon, M (2010) Incidence of 2009 pandemic influenza A H1N1 infection in England: a cross-sectional serological study. Lancet 375: pp. 1100-1108 CrossRef
    4. Wu, JT, Ho, A, Ma, ESK, Lee, C-K, Chu, DKW, Ho, P-L, Hung, IFN, Ho, LM, Lin, CK, Tsang, T, Lo, S-V, Lau, Y-L, Leung, GM, Cowling, BJ, Peiris, JSM (2011) Estimating infection attack rates and severity in real time during an influenza pandemic: analysis of serial cross-sectional serologic surveillance data. PLoS Med 8: pp. 1001103 CrossRef
    5. van Kerkhove, MD, Hirve, S, Koukounari, A, Mounts, W (2013) The H1N1pdm serology working group: Estimating age-specific cumulative incidence for the 2009 influenza pandemic: a meta-analysis of A(H1N1)pdm09 serological studies from 19 countries. Influenza Other Respir Viruses 7: pp. 872-886 CrossRef
    6. Heesterbeek, JAP (2002) A brief history of R0 and a recipe for its calculation. Acta Biotheor 50: pp. 189-204 CrossRef
    7. Wallinga, J, Lipsitch, M (2007) How generation intervals shape the relationship between growth rates and reproductive numbers. Proc R Soc B 274: pp. 599-604 CrossRef
    8. Riley, S, Kwok, KO, Wu, KM, Ning, DY, Cowling, BJ, Wu, JT, Ho, L-M, Tsang, T, Lo, S-V, Chu, DKW, Ma, ESK, Peiris, JSM (2011) Epidemiological characteristics of 2009 (H1N1) pandemic influenza based on paired sera from a longitudinal community cohort study. PLoS Med 8: pp. 1000442 CrossRef
    9. Fraser, C, Donnelly, CA, Cauchemez, S, Hanage, WP, Kerkhove, MDV, Hollingsworth, TD, Griffin, J, Baggaley, RF, Jenkins, HE, Lyons, EJ, Jombart, T, Hinsley, WR, Grassly, NC, Balloux, F, Ghani, AC, Ferguson, NM, Rambaut, A, Pybus, OG, Lopez-Gatell, H, Alpuche-Aranda, CM, Chapela, IB, Zavala, EP, Guevara, DME, Checchi, F, Garcia, E, Hugonnet, S, Roth, C (2009) The WHO Rapid Pandemic Assessment Collaboration: Pandemic potential of a strain of influenza A (H1N1): early findings. Science 324: pp. 1557-1561 CrossRef
    10. Boelle, P-Y, Ansart, S, Cori, A, Valleron, A-J (2011) Transmission parameters of the A/H1N1 (2009) influenza virus pandemic: a review. Influenza Other Respir Viruses 5: pp. 306-316 CrossRef
    11. Basta, NE, Chao, DL, Halloran, E, Matrajt, L, Longini, IM (2009) Strategies for pandemic and seasonal influenza vaccination of schoolchildren in the United States. Am J Epidemiol 170: pp. 679-686 CrossRef
    12. Truscott, J, Fraser, C, Hinsley, W, Cauchemez, S, Donnelly, C, Ghani, AC, Ferguson, NM, Meeyai, A (2010) Quantifying the transmissibility of human influenza and its seasonal variation in temperate regions. PLoS Curr Influenza 1: pp. 1125 CrossRef
    13. Cauchemez, S, Horby, P, Fox, A, Mai, LQ, Thanh, LT, Thai, PQ, Hoa, LNM, Hien, NT, Ferguson, NM (2012) Influenza infection rates, measurement errors and the interpretation of paired serology. PLoS Pathog 8: pp. 1003061 CrossRef
    14. Wu, JT, Cowling, BJ, Lau, EHY, Ip, DKM, Ho, L-M, Tsang, T, Chuang, SK, Leung, P-Y, Lo, S-V, Liu, S-H, Riley, S (2010) School closure and mitigation of pandemic (H1N1) 2009, Hong Kong. Emerg Infect Dis 16: pp. 538-541 CrossRef
    15. Wu, JT, Ma, ESK, Lee, C-K, Chu, DKW, Ho, P-L, Shen, AL, Ho, A, Hung, IFN, Riley, S, Ho, L-M, Lin, CK, Tsang, T, Lo, S-V, Lau, Y-L, Leung, GM, Cowling, BJ, Peiris, JSM (2010) The infection attack rate and severity of 2009 pandemic H1N1 influenza in Hong Kong. Clin Infect Dis 51: pp. 1184-1191 CrossRef
    16. The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2334/14/505/prepub
  • 刊物主题:Infectious Diseases; Parasitology; Medical Microbiology; Tropical Medicine; Internal Medicine;
  • 出版者:BioMed Central
  • ISSN:1471-2334
文摘
Background Influenza infection does not always cause clinical illnesses, so serological surveillance has been used to determine the true burden of influenza outbreaks. This study investigates the accuracy of measuring cumulative incidence of influenza infection using different serological survey designs. Methods We used a simple transmission model to simulate a typical influenza epidemic and obtained the seroprevalence over time. We also constructed four illustrative scenarios for baseline levels of antibodies prior and levels of boosting following infection in the simulated studies. Although illustrative, three of the four scenarios were based on the most detailed empirical data available. We used standard analytical methods to calculate estimated seroprevalence and associated confidence intervals for each of the four scenarios for both cross-sectional and longitudinal study designs. We tested the sensitivity of our results to changes in the sampled size and in our ability to detect small changes in antibody levels. Results There were substantial differences between the background antibody titres and levels of boosting within three of our illustrative scenarios which were based on empirical data. These differences propagated through to different and substantial patterns of bias for all scenarios other than those with very low background titre and high levels of boosting. The two survey designs result in similar seroprevalence estimates in general under these scenarios, but when background immunity was high, simulated cross-sectional studies had higher biases. Sensitivity analyses indicated that an ability to accurately detect low levels of antibody boosting within paired sera would substantially improve the performance of serological surveys, even under difficult conditions. Conclusions Levels of boosting and background immunity significantly affect the accuracy of seroprevalence estimations, and depending on these levels of immunity responses, different survey designs should be used to estimate seroprevalences. These results suggest that under current measurement criteria, cumulative incidence measured by serological surveys might have been substantially underestimated by failing to include all infections, including mild and asymptomatic infections, in certain scenarios. Dilution protocols more highly resolved than serial 2-fold dilution should be considered for serological surveys.

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