XLink-DB: Database and Software Tools for Storing and Visualizing Protein Interaction Topology Data
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- 作者：Chunxiang Zheng ; Chad R. Weisbrod ; Juan D. Chavez ; Jimmy K. Eng ; Vagisha Sharma ; Xia Wu ; James E. Bruce
- 刊名：Journal of Proteome Research
- 出版年：2013
- 出版时间：April 5, 2013
- 年：2013
- 卷：12
- 期：4
- 页码：1989-1995
- 全文大小：383K
- 年卷期：v.12,no.4(April 5, 2013)
- ISSN：1535-3907
文摘
As large-scale cross-linking data becomes available, new software tools for data processing and visualization are required to replace manual data analysis. XLink-DB serves as a data storage site and visualization tool for cross-linking results. XLink-DB accepts data generated with any cross-linker and stores them in a relational database. Cross-linked sites are automatically mapped onto PDB structures if available, and results are compared to existing protein interaction databases. A protein interaction network is also automatically generated for the entire data set. The XLink-DB server, including examples, and a help page are available for noncommercial use at celab.gs.washington.edu/crosslinkdbv1/" class="extLink">http://brucelab.gs.washington.edu/crosslinkdbv1/. The source code can be viewed and downloaded at ceforge.net/projects/crosslinkdb/?source=directory" class="extLink">https://sourceforge.net/projects/crosslinkdb/?source=directory.